Items where Author is "Carninci, Piero"

2022

Grapotte, Mathys and Saraswat, Manu and Bessière, Chloé and Menichelli, Christophe and Ramilowski, Jordan A. and Severin, Jessica and Hayashizaki, Yoshihide and Itoh, Masayoshi and Tagami, Michihira and Murata, Mitsuyoshi and Kojima-Ishiyama, Miki and Noma, Shohei and Noguchi, Shuhei and Kasukawa, Takeya and Hasegawa, Akira and Suzuki, Harukazu and Nishiyori-Sueki, Hiromi and Frith, Martin C. and Carninci, Piero and Chatelain, Clément and de Hoon, Michiel J. L. and Wasserman, Wyeth W. and Bréhélin, Laurent and Lecellier, Charles-Henri and Fantom consortium, . (2022) Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature communications, 13 (1). p. 1200.

Baranasic, Damir and Hörtenhuber, Matthias and Balwierz, Piotr J. and Zehnder, Tobias and Mukarram, Abdul Kadir and Nepal, Chirag and Várnai, Csilla and Hadzhiev, Yavor and Jimenez-Gonzalez, Ada and Li, Nan and Wragg, Joseph and D'Orazio, Fabio M. and Relic, Dorde and Pachkov, Mikhail and Díaz, Noelia and Hernández-Rodríguez, Benjamín and Chen, Zelin and Stoiber, Marcus and Dong, Michaël and Stevens, Irene and Ross, Samuel E. and Eagle, Anne and Martin, Ryan and Obasaju, Oluwapelumi and Rastegar, Sepand and McGarvey, Alison C. and Kopp, Wolfgang and Chambers, Emily and Wang, Dennis and Kim, Hyejeong R. and Acemel, Rafael D. and Naranjo, Silvia and Łapiński, Maciej and Chong, Vanessa and Mathavan, Sinnakaruppan and Peers, Bernard and Sauka-Spengler, Tatjana and Vingron, Martin and Carninci, Piero and Ohler, Uwe and Lacadie, Scott Allen and Burgess, Shawn M. and Winata, Cecilia and van Eeden, Freek and Vaquerizas, Juan M. and Gómez-Skarmeta, José Luis and Onichtchouk, Daria and Brown, Ben James and Bogdanovic, Ozren and van Nimwegen, Erik and Westerfield, Monte and Wardle, Fiona C. and Daub, Carsten O. and Lenhard, Boris and Müller, Ferenc. (2022) Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics, 54 (7). pp. 1037-1050.

2021

Grapotte, Mathys and Saraswat, Manu and Bessière, Chloé and Menichelli, Christophe and Ramilowski, Jordan A. and Severin, Jessica and Hayashizaki, Yoshihide and Itoh, Masayoshi and Tagami, Michihira and Murata, Mitsuyoshi and Kojima-Ishiyama, Miki and Noma, Shohei and Noguchi, Shuhei and Kasukawa, Takeya and Hasegawa, Akira and Suzuki, Harukazu and Nishiyori-Sueki, Hiromi and Frith, Martin C. and Fantom consortium, and Chatelain, Clément and Carninci, Piero and de Hoon, Michiel J. L. and Wasserman, Wyeth W. and Bréhélin, Laurent and Lecellier, Charles-Henri. (2021) Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications, 12 (1). p. 3297.

14 December 2015

Carbajo, Daniel and Magi, Shigeyuki and Itoh, Masayoshi and Kawaji, Hideya and Lassmann, Timo and Arner, Erik and Forrest, Alistair R. R. and Carninci, Piero and Hayashizaki, Yoshihide and Daub, Carsten O. and Fantom Consortium, and Okada-Hatakeyama, Mariko and Mar, Jessica C.. (2015) Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage. PLoS ONE, 10 (12). e0144176.

2014

Andersson, Robin and Gebhard, Claudia and Miguel-Escalada, Irene and Hoof, Ilka and Bornholdt, Jette and Boyd, Mette and Chen, Yun and Zhao, Xiaobei and Schmidl, Christian and Suzuki, Takahiro and Ntini, Evgenia and Arner, Erik and Valen, Eivind and Li, Kang and Schwarzfischer, Lucia and Glatz, Dagmar and Raithel, Johanna and Lilje, Berit and Rapin, Nicolas and Bagger, Frederik Otzen and Jørgensen, Mette and Andersen, Peter Refsing and Bertin, Nicolas and Rackham, Owen and Burroughs, A. Maxwell and Baillie, J. Kenneth and Ishizu, Yuri and Shimizu, Yuri and Furuhata, Erina and Maeda, Shiori and Negishi, Yutaka and Mungall, Christopher J. and Meehan, Terrence F. and Lassmann, Timo and Itoh, Masayoshi and Kawaji, Hideya and Kondo, Naoto and Kawai, Jun and Lennartsson, Andreas and Daub, Carsten O. and Heutink, Peter and Hume, David A. and Jensen, Torben Heick and Suzuki, Harukazu and Hayashizaki, Yoshihide and Müller, Ferenc and Fantom Consortium, and Forrest, Alistair R. R. and Carninci, Piero and Rehli, Michael and Sandelin, Albin. (2014) An atlas of active enhancers across human cell types and tissues. Nature, Vol. 507, H. 7493. pp. 455-461.

Morikawa, Hiromasa and Ohkura, Naganari and Vandenbon, Alexis and Itoh, Masayoshi and Nagao-Sato, Sayaka and Kawaji, Hideya and Lassmann, Timo and Carninci, Piero and Hayashizaki, Yoshihide and Forrest, Alistair R. R. and Standley, Daron M. and Date, Hiroshi and Sakaguchi, Shimon and Fantom Consortium, . (2014) Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, H. 14. pp. 5289-5294.