McLeod, Robert A. and Diogo Righetto, Ricardo and Stewart, Andy and Stahlberg, Henning. (2018) MRCZ - A file format for cryo-TEM data with fast compression. Journal of Structural Biology, 201 (3). pp. 252-257.
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Abstract
The introduction of fast CMOS detectors is moving the field of transmission electron microscopy into the computer science field of big data. Automated data pipelines control the instrument and initial processing steps which imposes more onerous data transfer and archiving requirements. Here we conduct a technical demonstration whereby storage and read/write times are improved 10× at a dose rate of 1 e-/pix/frame for data from a Gatan K2 direct-detection device by combination of integer decimation and lossless compression. The example project is hosted at github.com/em-MRCZ and released under the BSD license.
| Faculties and Departments: | 05 Faculty of Science > Departement Biozentrum > Former Organization Units Biozentrum > Structural Biology (Stahlberg) |
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| UniBasel Contributors: | Stahlberg, Henning |
| Item Type: | Article, refereed |
| Article Subtype: | Research Article |
| Publisher: | Elsevier |
| ISSN: | 1047-8477 |
| e-ISSN: | 1095-8657 |
| Note: | Publication type according to Uni Basel Research Database: Journal article |
| Language: | English |
| Identification Number: |
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| edoc DOI: | |
| Last Modified: | 10 Jul 2018 12:33 |
| Deposited On: | 16 May 2018 08:35 |
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