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FANTOM4 EdgeExpressDB: : an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Severin, J. and Waterhouse, A. M. and Kawaji, H. and Lassmann, T. and van Nimwegen, E. and Balwierz, P. J. and de Hoon, M. J. and Hume, D. A. and Carninci, P. and Hayashizaki, Y. and Suzuki, H. and Daub, C. O. and Forrest, A. R.. (2009) FANTOM4 EdgeExpressDB: : an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. Genome biology, Vol. 10, H. 4 , R39.

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Official URL: http://edoc.unibas.ch/dok/A5259620

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Abstract

ABSTRACT: EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database (http://fantom.gsc.riken.jp/4/edgeexpress) summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.
Faculties and Departments:05 Faculty of Science > Departement Biozentrum > Computational & Systems Biology > Bioinformatics (van Nimwegen)
UniBasel Contributors:van Nimwegen, Erik
Item Type:Article, refereed
Bibsysno:Link to catalogue
Publisher:BioMed Central
ISSN:1465-6906
Note:Publication type according to Uni Basel Research Database: Journal article
Last Modified:22 Mar 2012 14:21
Deposited On:22 Mar 2012 13:23

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